我有两个文件,一个文本文件和一个 vcf 文件。我想在 vcf 文件中查找文本文件的值。如果有匹配项,我想打印匹配值,但出现错误:ix = allel.SortedIndex(allel['POS']).locate_intersection(callset["variants/POS"]) TypeError: 'module' object不可下标
文件的内容看起来像这样
#CHROM POS ID REF ALT QUAL FILTER INFO
1 10366 rs58108140 G A 100 PASS AN=2184;AC=314
1 10611 rs189107123 C G 100 PASS AC=41;AN=2184
1 13302 rs180734498 C T 100 PASS AN=2184;AC=249
1 13327 rs144762171 G C 100 PASS AC=59;AN=2184
def readVcf():
allel.vcf_to_zarr("merged_Small.vcf", "example.zarr", fields="*", overwrite=True)
callset = zarr.open_group('example.zarr', mode="r")
file2=allel.vcf_to_recarray("FamilyVarient.txt")
ix = file2.SortedIndex(file2['POS']).locate_intersection(callset["variants/POS"])
print(ix)