我试图在列上迭代我的函数,但它不能正常工作。你们能告诉我我必须在哪里更正我的代码吗?
那是我的代码
def SmilesToFPS(smiles):
mol = Chem.MolFromSmiles(smiles)
fps = FingerprintMols.FingerprintMol(mol)
#fpSize=1024, minPath=1, maxPath=7,
# bitsPerHash=2, useHs=True,
# tgtDensity=0.0, minSize=0,
# branchedPaths=True, useBondOrder=True,
# atomInvariants=0, fromAtoms=0, atomBits=None, bitInfo=None)
return print(fps.ToBitString())
for index, row in df_3.iterrows():
#for i, number in df_3['SmilesCode'].iteritems():
#this doesn't work.thats why I used .iterrows
try:
fingerprints = SmilesToFPS(smiles)
except:
fingerprints = 'ERROR'
print('\r', row['SmilesCode'], fingerprints, end='')
smiles_list.append(row['SmilesCode'])
fingerprint_list.append(fingerprints)
df_4 = pd.DataFrame({'SmilesCode' : smiles_list, 'Fingerprints' : fingerprint_list})
我希望每个 SmilesCode 都有一个位串,但我只会得到每一行/SmilesCode 的错误。定义的函数确实可以工作,但如果我用它来迭代我想要的列,那就不行了!如果我使用 pandas 的 apply() 函数:
df_modDfObj = df_3.apply(SmilesToFPS)
我得到这个错误代码:
ArgumentError:rdkit.Chem.rdmolops.RDKFingerprint(NoneType, int, int, int, int, int, float, int) 中的 Python 参数类型与 C++ 签名不匹配:RDKFingerprint(RDKit::ROMol mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=True, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=True, bool useBondOrder=True, boost::python:: api::object atomInvariants=0, boost::python::api::object fromAtoms=0, boost::python::api::object atomBits=None, boost::python::api::object bitInfo=None)