我怀疑这对我来说是一种 klugefest,但我正在使用 Luigi 和 Sciluigi 模块,它们在初始化返回“自我”之前设置了许多关键参数。如果我在返回 self 后尝试对这些参数进行粗暴处理,Luigi.Parameter 对象会以这样的方式掩盖它们,以至于我无法做我需要做的事情。
luigi 和 sciluigi 类(使用它们时)包含 no __init__
。如果我尝试插入__init__
或调用super(ChildClass, self).__init__(*args, **kwargs)
...我会收到奇怪的错误“意外参数”错误。
所以 Sciluigi 类看起来像这样......
class MyTask(sciluigi.task):
param1 = sciluigi.Parameter(default='Yes') #String only
param2 = sciluigi.Parameter(default='No') #String only
def out_target(self):
return sciluigi.TargetInfo(self, self.out)
def run(self):
with self.out_target().open('w') as foofile:
foofile.write('foo\n')
所以...我希望我可以通过 setattr PRIOR 动态设置一些参数,以实际返回“自我”。但是 setattr 需要对象。
我希望我能做类似的事情......
setattr(inspect.stack()[?][?], 'DynamicVar', sciluigi.Parameter(default='Yes') )
编辑:@查尔斯·达菲
好吧,我不确定哪些信息最有帮助。
第一个问题是;我无法添加初始化。实际代码如下,__init__
添加了一个方法。如果我尝试运行它,我已经包含了结果错误。它同样的错误是如果我运行超级调用__init__
class FileConverter(sciluigi.Task):
"""
"""
in_target = None # Mandatory
out = sciluigi.Parameter() # <file>
exepath = sciluigi.Parameter(default = "")
def __init__(self):
self.var = 'anything'
def out_target(self):
log.debug("In 'FileConverter.out_target'... ")
return sciluigi.TargetInfo(self, self.out)
def run(self):
result = None
command = ''.join([
self.exepath, _slash, "FileConverter ",
" -in ", self.in_target().path,
" -out ", self.out_target().path,
" -out_type ", self.file_type
])
log.info("RUNNING COMMAND: " + command)
result = self.ex(command)
log.info("result: " + result[1])
错误
2017-02-24 17:01:48 | WARNING | Will not run MyWorkflow(instance_name=sciluigi_workflow) or any dependencies due to error in deps() method:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/luigi/worker.py", line 697, in _add
deps = task.deps()
File "/Library/Python/2.7/site-packages/luigi/task.py", line 572, in deps
return flatten(self._requires())
File "/Library/Python/2.7/site-packages/luigi/task.py", line 544, in _requires
return flatten(self.requires()) # base impl
File "/Library/Python/2.7/site-packages/sciluigi/workflow.py", line 105, in requires
workflow_output = self.workflow()
File "/Users/mikes/Documents/Eclipseworkspace/Bioproximity/OpenMS-Python-Luigi/site-packages/Bioproximity/sciluigi_tasks/PipelineTest1.py", line 33, in workflow
exepath = "/Applications/OpenMS-2.1.0/TOPP"
File "/Library/Python/2.7/site-packages/sciluigi/workflow.py", line 145, in new_task
newtask = sciluigi.new_task(instance_name, cls, self, **kwargs)
File "/Library/Python/2.7/site-packages/sciluigi/task.py", line 37, in new_task
newtask = cls.from_str_params(kwargs)
File "/Library/Python/2.7/site-packages/luigi/task.py", line 412, in from_str_params
return cls(**kwargs)
File "/Library/Python/2.7/site-packages/luigi/task_register.py", line 99, in __call__
h[k] = instantiate()
File "/Library/Python/2.7/site-packages/luigi/task_register.py", line 80, in instantiate
return super(Register, cls).__call__(*args, **kwargs)
TypeError: __init__() got an unexpected keyword argument 'instance_name'
第二个问题是:
如果我等待 self 返回,我将无法再区分(例如使用上面的代码)......
in_target = None # Mandatory
out = sciluigi.Parameter() # <file>
如果我执行type(out)
, type 报告参数只是一个字符串(不是 sciluigi.Parameter 对象),所以如果我尝试使用 `ìsinstance(out, sciluigi.Parameter)...它返回 False。
底线是:
我需要能够动态(以编程方式)设置 sciluigi.Parameter 对象,随后能够区分 sciluigi.Parameter() 对象变量(如out
)和“真实” str() 对象(如in_target
)
我希望这是有道理的。